If you have to export plot to a file the Mathematica still needs to run the frontend (really! :-O) so you have to give access to your display - read below about "interactive graphical mode". You should export plots to a file or better - save the data to a file and create plots with apropriate software like gnuplot or xmgrace (mathematica graphics looks really awful). Note about plots: there is no graphic output to the screen in this mode.
If you want also input lines to appear there add in the first line of your infile: Generate a text file by choosing from menu File-> Save_As_Special.-> Package_Formatīy default only output lines go to standard output. These cells will be defined as initialization cells by clicking on Cell-> Cell Properties-> Initialization_Cell in the menu bar.ģ. Select the cell or set of cells that contain the commands you wish to be written to the infile text file.Ģ. To convert Mathematica notebook file into plain text file use Mathematica's Front End features:ġ. Please refer to man sbatch/srun and Cluster user's guide to learn about the queueing system and job submission. Various ways of using Mathematica under the queueing system are presented below.
Running Mathematica in the queueing system (on cluster nodes) On the cluster - remember to login to chcuk with X forwarding: ssh -X chuck. To start Mathematica on any workstation in the CAMK network type mathematica or (if it wasn't set up) /Vol/share/Mathematica//Executables/mathematica. System administrators can kill abandoned (no immediate contact), idle (no kernel activity) sessions. If all the licenses are busy please negotiate directly with their users. To display current usage of the Mathematica licenses type monitorlm on chuck. Please do not leave Mathematica sessions open when not needed! the frontend for editing notebooks and the kernel for calculations in the text mode (useful in the batch system). Each of them can be used separatelly, e.g. The software consists of two independent components - the graphical frontend and the kernel, so actually there are 7 frontend licenses and 7 kernel licenses. There are 7 Mathematica licenses available at CAMK.
The full manual is available from the program level and on the web. It's used mostly for symbolic math but can do much more. Mathematica is a platform for all forms of computations.
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